- [Peterson, Kalda, Vendelin, 2013]
- Pearu Peterson, Mari Kalda, Marko Vendelin.
Real-time Determination of Sarcomere Length of a Single Cardiomyocyte during Contraction.
Am J Physiol Cell Physiol, Article in Press.
- [Schryer, Peterson, Illaste, Vendelin, 2012]
- David W Schryer, Pearu Peterson, Ardo Illaste, Marko Vendelin.
Sensitivity Analysis of Flux Determination in Heart by H218O -provided Labeling Using a Dynamic Isotopologue Model of Energy Transfer Pathways.
PLoS Comput Biol, 8(12):e1002795.
- [Illaste, Laasmaa, Peterson, Vendelin, 2012]
- Ardo Illaste, Martin Laasmaa, Pearu Peterson, and Marko Vendelin.
Analysis of Molecular Movement Reveals Latticelike Obstructions to Diffusion in Heart Muscle Cells.
Biophysical Journal, 102(4):739-748.
- [Karo, Peterson, Vendelin, 2012]
- Jaanus Karo, Pearu Peterson, and Marko Vendelin.
Molecular Dynamics Simulations of Creatine Kinase and Adenine Nucleotide Translocase in Mitochondrial Membrane Patch.
Journal of Biological Chemistry, 287(10):7467-7476.
- [Schryer, Vendelin, Peterson, 2011]
- David W Schryer, Marko Vendelin, and Pearu Peterson.
Symbolic flux analysis for genome-scale metabolic networks.
BMC Systems Biology, 5:81, 2011.
- [Laasmaa, Vendelin, Peterson, 2011]
- Martin Laasmaa, Marko Vendelin, and Pearu Peterson.
Application of regularized Richardson-Lucy algorithm for deconvolution of confocal microscopy images.
Journal of Microscopy, 243(2):124-140, 2011. Open Access.
- [Schryer, Peterson, Paalme, Vendelin, 2009]
- David W. Schryer, Pearu Peterson, Toomas Paalme, and Marko Vendelin.
Bidirectionality and Compartmentation of Metabolic Fluxes Are
Revealed in the Dynamics of Isotopomer Networks.
Internation Journal of Molecular Sciences,
10(4):1697-1718, 2009.
- [Peterson, Soomere, Engelbrecht, van Groesen, 2003]
- P. Peterson, T. Soomere, J. Engelbrecht, and E. van Groesen.
Soliton interaction as a possible model for extreme waves in shallow
water.
Nonlinear Processes in Geophysics,
10:503-510, 2003.
- [Salupere, Engelbrecht, Peterson, 2003]
- A. Salupere, J. Engelbrecht, and P. Peterson.
On the long-time behaviour of soliton ensembles.
Mathematics and Computers in Simulation, 62(1-2):137-147, 2003.
- [Salupere, Peterson, Engelbrecht, 2003]
- A. Salupere, P. Peterson, and J. Engelbrecht.
Long-time behaviour of soliton ensembles.
Part II. Periodical patterns of trajectories.
Chaos, Solitons and Fractals,
15(1):29-40, 2003.
- [Peterson, 2002]
- Pearu Peterson.
Reconstruction of multi-soliton interactions using crest data for
(2+1)-dimensional KdV type equations.
Physica D, 171(4):221-235, 2002.
- [Salupere, Peterson, Engelbrecht, 2002]
- A. Salupere, P. Peterson, and J. Engelbrecht.
Long-time behaviour of soliton ensembles.
Part I. Emergence of ensembles.
Chaos, Solitons and Fractals,
14(9):1413-1424, 2002.
- [Peterson, van Groesen, 2001]
- Pearu Peterson and E. van Groesen.
Sensitivity of the inverse wave crest problem.
Wave Motion, 34(4):391--399, 2001.
- [Peterson, van Groesen, 2000]
- Pearu Peterson and E. van Groesen.
A direct and inverse problem for wave crests modelled by
interactions of two solitons.
Physica D, 141:316--332, 2000.
- [Peterson, 2009]
- Pearu Peterson. F2PY: a tool for connecting Fortran and Python programs.
Int. J. Computational Science and Engineering, 4 (4):296-305, 2009.
Authors post-peer review, accepted paper submitted for final publication by Inderscience
- [Ilison, Lauri; Salupere, Peterson, 2007]
- L. Illision, A. Salupere, and P. Peterson
On the propagation of localized perturbations in media with microstructure.
Proc. Estonian Acad. Sci. Phys. Math., 56(2):84--92, 2007.
- [Salupere, Tamm, Engelbrecht, Peterson, 2007]
- Salupere, A.; Tamm, K.; Engelbrecht, J.; Peterson, P.
On the interaction of deformation waves in microstructured solids.
Proc. Estonian Acad. Sci. Phys. Math., 56(2):93--99, 2007.
- [Soomete, Elken, Kask, Keevallik, Kõuts, Metsaveer, Peterson, 2003]
- Tarmo Soomere, Jüri Elken, Jüri Kask, Sirje Keevallik, Tarmo Kõuts,
Jaan Metsaveer, and Pearu Peterson.
Fast ferries as a new key forcing factor in Tallinn Bay.
Proc. Estonian Acad. Sci. Eng., 9(3):220--242, 2003.
- [Karjanto, van Groesen, Peterson, 2002]
- Natanael Karjanto, E. van Groesen, and Pearu Peterson.
Investigation of the maximum amplitude increase from the
Benjamin-Feir instability.
Journal of the Indonesian Mathematical Society (Jurnal MIHMI),
8:39--47, 2002.
- [Peterson, Salupere, 1997]
- P. Peterson and A. Salupere.
Solitons in a perturbed Korteweg-de Vries system.
Proc. Estonian Acad. Sci. Phys. Math., 46(1/2):102--110, 1997.
- [Kalda, Peterson, Engelbrecht, Vendelin, 2013]
- Mari Kalda, Pearu Peterson, Jüri Engelbrecht, Marko Vendelin
A Cross-Bridge Model Describing the Mechanoenergetics of Actomyosin Interaction.
In Computer Models in Biomechanics, Springer, Netherlands, 2013, 91-102.
- [Peterson, Martins, Alonso, 2001]
- P. Peterson, J. R. R. A. Martins, and J. J. Alonso.
Fortran to Python Interface Generator with an Application to
Aerospace Engineering.
In Proceedings of the 9th International Python Conference,
Long Beach, California, 2001, CDROM.
- [Engelbrecht, Salupere, Peterson, 1999]
- J. Engelbrecht, A. Salupere, and P. Peterson.
Nonlinear wave motion: Complexity and simplicity revisited.
In E. Lavendelis and M. Zakrzhevsky (eds.), Proc. of the
IUTAM/IFToMM Symposium on Synthesis of Nonlinear Dynamical
Systems, Kluwer, Dordrecht, 1999, 25-36.
- [Peterson, 1997]
- P. Peterson.
Travelling waves in forced Korteweg-de Vries system.
In 10th Nordic Seminar on Computational Mechanics,
Tallinn Technical University, Estonia, October 24-25, 1997.
- [Peterson, van Groesen, 2001]
- P. Peterson and E. van Groesen.
Wave interaction patterns and prediction of wave parameters.
In Symposium on Mathematical Support for Hydrodynamic Laboratories
(LabMath), Institut Teknologi Bandung, Indonesia, September 9--11,
2001.
- [Engelbrecht, Salupere, Peterson, 2001]
- J. Engelbrecht, A. Salupere, and P. Peterson.
Soliton ensembles and the periodicity in their interaction patterns.
In Seminar and Workshop on Nonlinear Lattice Structure and
Dynamics, Dresden, Germany, September 4--28, 2001.
- [Peterson, van Groesen, 2000]
- P. Peterson and E. van Groesen.
The direct and inverse problem of wave crests.
In 20th International Congress of Theoretical and Applied Mechanics
--- ICTAM 2000, page 44, Chicago, August 27--September 2, 2000.
- [Engelbrecht, Salupere, Peterson, Maugin, 1997]
- J. Engelbrecht, A. Salupere, P. Peterson, and G.A. Maugin.
Solitary waves in dispersive solids.
In 3rd EUROMECH Solid Mechanics Conference, page 336. KTH, Royal
Institute of Technology, Stockholm, Sweden, August 18--22 1997.
- [Peterson, Salupere, 1997]
- P. Peterson and A. Salupere.
Solitons in a perturbed Korteweg-de Vries system.
In EUROMECH 348, Nonlinear Dynamics of Heterogeneous and
Microstuctured Solids, page 38. Tallinn, Estonian Acad. Sci., May 22--26
1996.
- [Peterson, 2012]
- Pearu Peterson
Design Cluster: a web application for composing optimal CENS HPCC.
- [Peterson, 2012]
- Pearu Peterson.
Simple RPC C++: a simple RPC wrapper generator to C/C++ functions.
- [Peterson, 2012]
- Pearu Peterson.
IOCBio Sarcomere length and fundamental period software.
- [Peterson, Schryer, 2012]
- Pearu Peterson and David W. Schryer.
Mass isotopologue equations generator.
- [Peterson, Schryer, 2011]
- Pearu Peterson and David W. Schryer.
Steady state flux analysis module.
- [Peterson, 2009--]
- Pearu Peterson.
PyLibNIDAQmx: exposes NI-DAQmx software driver to Python.
- [Peterson, 2009--]
- Pearu Peterson.
PyLibTiff: wraps libtiff library to Python.
- [Peterson, Laasmaa, 2009--]
- Pearu Peterson, Martin Laasmaa.
IOC Microscope: tools for manipulating and analyzing 3D microscope
images.
- [Peterson, 2009]
- Pearu Peterson
IOCBio - open-source software from the Laboratory of Systems Biology.
- [Peterson, Johansson, 2007--]
- Pearu Peterson and Fredrik Johansson.
SympyCore - an efficient pure Python Computer Algebra System.
- [Peterson, 2006]
- Pearu Peterson.
symbolic: Symbolic manipulation package for Python. Availability:
contact the author.
- [Peterson, 2006--]
- Pearu Peterson.
G3 F2PY: The Third Generation of F2PY.
- [Peterson, 2004]
- Pearu Peterson.
fdfpack: Finite Difference Formula package for Python. Available in SciPy
sandbox via SVN checkout.
- [Peterson, 2001--]
- Pearu Peterson.
PyVTK: Tools for manipulating VTK files in Python.
- [Peterson, 2001]
- Pearu Peterson.
mgppp: Preprocessor for MagicPoint presentation files for inclusion of LaTeX text.
- [Peterson, 2000]
- Pearu Peterson
polyhedron: A Python wrapper to CDDLIB.
- [Peterson, 1999--]
- Pearu Peterson.
F2PY: Fortran to Python interface generator. Now part of NumPy.
- [Jones, Oliphant, Peterson, 2001--]
- Eric Jones, Travis Oliphant, Pearu Peterson and others.
SciPy: Open source scientific tools for Python.
- [Peterson, 2009]
- P. Peterson.
An efficient Computer Algebra System for Python.
In SIAM Conference on Computational Science & Engineering,
Miami Hilton Hotel, Miami, Florida, USA, March 2--6 2009.
SLIDES
- [Schryer, Peterson, Palme, Vendelin, 2009]
- D. W. Schryer, P. Peterson, T. Paalme, M. Vendelin.
Isotopomeric 13C Labeling of Amino Acids Reveal Compartmentation in Saccharomyces uvarum.
In Biophysical Society 53rd Annual Meeting, Boston, Massachusetts,
USA, February 28--March 4 2009.
- [Laasmaa, Peterson, Birkedal, Vendelin, 2009]
- M. Laasmaa, P. Peterson, R. Birkedal, M. Vendelin.
3D Confocal Microscope Image Enhancement by Richardson-Lucy Deconvolution Algorithm with Total Variation Regularization.
In Biophysical Society 53rd Annual Meeting, Boston, Massachusetts,
USA, February 28--March 4 2009.
- [Peterson, 2008]
- P. Peterson.
Scientific computations within Python: numerical and analytical tools.
The 13th Estonian Theory Days, Jõulumäe, Estonia, October 3--4, 2008. SLIDES
- [Peterson, 2008]
- P. Peterson.
On providing a Computer Algebra System for Python.
In EuroSciPy 2008 Conference, Leipzig, Germany,
July 26--27, 2008. SLIDES
- [Peterson, 2007]
- P. Peterson.
The G3 F2PY for connecting Python and Fortran 90 programs.
In Software Issues in Computational Science and Engineering,
Uppsala University, Sweden, August 15-16, 2007. SLIDES
- [Peterson, 2005]
- P. Peterson.
Ekstreemsete lainete modelleerimine. (Modelling extreme waves).
In 12th Estonian Mechanics Days, Tallinn, Estonia, September
12--13, 2005. SLIDES
- [Peterson, 2005]
- Building user-friendly interfaces to high-quality Fortran libraries.
In SIAM Conference on Computational Science & Engineering,
Disney's Coronado Springs Resort, Orlando, Florida, USA, February 12--15 2005.
SLIDES
- [Peterson, 2003]
- Soliton interactions and interaction solitons.
In Advanced Study School: Nonlinear Processes in Marine Sciences,
Hageri, Estonia, October 12--19, 2003. SLIDES
- [Peterson, 2002]
- Pearu Peterson.
Ekstreemsete lainete otsingul. (Searching for extreme waves.)
In 8th Estonian Mathematics Days, Kääriku, Estonia,
June 26--28 2002.
- [Peterson, van Groesen, 2001]
- P. Peterson and E. van Groesen.
Wave interaction patterns and prediction of wave parameters.
In Symposium on Mathematical Support for Hydrodynamic
Laboratories (LabMath), Institut Teknologi Bandung, Indonesia,
September 9--11, 2001.
- [Peterson, van Groesen, 2000]
- P. Peterson and E. van Groesen.
The direct and inverse problem of wave crests.
In 20th International Congress of Theoretical and Applied Mechanics
--- ICTAM 2000, Chicago, August 27--September 2, 2000.
- [Peterson, 1998]
- P. Peterson.
Pinnalained ja interaktsiooni solitonid. (Surface waves and
interaction solitons).
In 10th Estonian Mechanics Days, Aegviidu, Estonia, September
11--13 1998.
- [Peterson, Salupere, 1997]
- P. Peterson and A. Salupere.
Travelling waves in forced Korteweg-de Vries system.
In 10th Nordic Seminar on Computational Mechanics, Tallinn,
Estonia, October 24--25 1997.
- [Peterson, Salupere, 1997]
- P. Peterson and A. Salupere.
Solitons in a perturbed Korteweg-de Vries system.
In EUROMECH 348, Nonlinear Dynamics of Heterogeneous and
Microstuctured Solids, Tallinn, Estonian Acad. Sci., May 22--26
1996.
- [Peterson, 1996]
- Pearu Peterson.
Lainekest rakendused. (Applications of Wavelets.)
In Workshop of Industrial Mathematics, Tallinn Technical University,
March, 1996.
- [Peterson, 2007]
- Pearu Peterson.
CENS computational cluster.
Institute of Cybernetics.
February 2007. SLIDES.
- [Peterson, 2006]
- Pearu Peterson.
The future of F2PY in NumPy universe. Simula Research Laboratory, Lysaker,
Norway, September 2006.
- [Peterson, 2004]
- Pearu Peterson.
Interaction solitons in soliton interactions.
CENS Intensive week: Nonlinear waves and applications,
Institute of Cybernetics.
September 2004.
- [Peterson, 2004]
- Pearu Peterson.
Modelling of Freak Waves.
Joint seminar of CMA and CENS, Institute of Cybernetics,
March 2004.
- [Peterson, 2004]
- Pearu Peterson.
Extreme waves.
Seminar on Applied Mathematics, Institute of Cybernetics,
February 2004.
- [Peterson, 2003]
- Pearu Peterson.
Ekstreemsed lained ja nende modelleerimine (Modelling of extreme waves.)
Annual seminar of Institute of Cybernetics, Pedase,
September 2003.
- [Peterson, 2003]
- Pearu Peterson.
Ekstreemsed lained ja nende evolutsiooni lähendusteta arvutus.
(Extreme waves and non-approximate computation of their evolution.)
CENS Seminar, Institute of Cybernetics,
April 2003. SLIDES
- [Peterson, 2002]
- Pearu Peterson.
Modeling of Extreme Waves. Exact solver for free-surface problem.
MPCM Seminar, University of Twente,
December 2002.
- [Peterson, 2000]
- Pearu Peterson.
Conserving nonlinearity.
Dept. of Applied Mathematics, University of Twente,
November 2000.
- [Peterson, van Groesen, 1999]
- Pearu Peterson and E. van Groesen.
Wave crests.
Maritime Research Institute Nethelands, Wageningen, December, 1999.
- [Peterson, van Groesen, 1999]
- Pearu Peterson and E. van Groesen.
Looking down on waves.
Dept. of Applied Mathematics, University of Twente, December, 1999.
- [Peterson, 1999]
- Pearu Peterson.
Laineharjade matemaatiline kirjeldus. (Mathematical description of
wave crests.)
Institute of Cybernetics, May, 1999.
- [Peterson, 1998]
- Pearu Peterson.
Interaktsioonisolitonid. (Interaction solitons.)
Annual seminar of Institute of Cybernetics, Aegviidu,
October, 1998.
- [Peterson, 1997]
- Pearu Peterson.
University of Twente, The Netherlands, March, 1997.
- [Peterson, 1995]
- Pearu Peterson.
Tallinn Technical University, Institute of Mathematics,
September, 1995.
- [Soomere, Elken, Kask, Keevalik, Kouts, Peterson, Schwarzer, Talpas, 2002]
- T. Soomere, J. Elken, A. Kask, S. Keevalik, T. Kouts, P. Peterson,
K. Schwarzer, A. Talpas.
The influence of ship wake wash on beaches of the Tallinn Bay and
Naissaar and Aegna Islands, and the possibilities of its
neutralizing. Research Report, Estonian Marine Institute, Tallinn,
2002.
- [Salupere, Peterson, Engelbrecht, 2001]
- A. Salupere, P. Peterson, and J. Engelbrecht.
Long time behaviour of soliton ensembles.
Research Report Mech 223/01, Institute of Cybernetics, 2001.
- [Peterson, 2001]
- P. Peterson.
Construction and decomposition of multi-soliton solutions of KdV
type equations.
Research Report Mech 227/01, 228/01, 229/01, Institute of
Cybernetics, 2001.
- [Peterson, van Groesen, 1999]
- P. Peterson and E. van Groesen.
Direct and inverse problem of wave crests modelled by solitons
interactions.
Research Report 216/99, Institute of Cybernetics, 1999.
- [Peterson, 1998]
- P. Peterson.
Interaction of KdV-type solitons in terms of real space and time
variables.
Research Report 186/98, Institute of Cybernetics, 1998.
- [Peterson, 1998]
- P. Peterson.
Interaction of KdV-type solitons in terms of phase variables.
Interaction soliton.
Research Report 185/98, Institute of Cybernetics, 1998.
- [Peterson, 1997]
- P. Peterson.
Analytical solutions of Kadomtsev-Petviashvili equation.
JRP-report, University of Twente, 1997.
- [Peterson, 1997]
- P. Peterson.
Analytical solutions of Kadomtsev-Petviashvili equation.
Research Report 179/97, Institute of Cybernetics, 1997.
- [Peterson, 1997]
- P. Peterson.
Travelling waves in nonconservative media with dispersion.
Research Report 178/97, Institute of Cybernetics, 1997.
- [Engelbrecht, Peterson, Salupere, 1996]
- J. Engelbrecht, P. Peterson, and A. Salupere.
Numerical methods in deformation wave dynamics.
Research Report EMR 4026, Tallinn Technical University, 1996.
- [Engelbrecht, Peterson, Salupere, 1996]
- J. Engelbrecht, P. Peterson, and A. Salupere.
Spectral analysis of soliton formation.
Research Report ESF grant No 1487, Institute of Cybernetics, 1996.
(In Estonian).
- [Peterson, Salupere, 1996]
- P. Peterson and A. Salupere.
Solitons in a perturbed Korteweg-de Vries system.
Research Report 162/96, Institute of Cybernetics, 1996.
- [Peterson, 1994]
- P. Peterson.
The NAFEMS free vibration benchmark tests to the shipfem beam
elements. Technical Report VTT VALB26, Maritime Research Area of the
VTT Manufacturing Technology, 1994.
- [Peipman, Peterson, Vendelin, 1994]
- T. Peipman, P. Peterson, and M. Vendelin.
Diffusion of ground water I. Theory, II. Programs.
Research Report 105-106/94, Institute of Cybernetics, 1994. (In Estonian)
- [Peterson, 2006]
- PythonThreads interview with Pearu Peterson.
December 28, 2006.
- [Peterson, 2003]
- Pearu Peterson.
Ekstreemsed lained. (Extreme waves.)
In 5th Autumn School of Young Physicists, Kääriku, Estonia,
October 10--12 2003. SLIDES
- [Peterson, 2000]
- P. Peterson.
Pinnalained vees. (Surface waves on water.)
Küberneetika Instituudi 40 aastapäev, (The 40th anniversary of
Institute of Cybernetics), 2000.
- [Peterson, 1999]
- P. Peterson.
Solitonid madalas vees. (Solitons in shallow water.)
Teaduskonverents Kord ja Kaos, ETA,
(Scientific conference Order and Chaos, Estonian Academy of
Sciences), 1999.
- [Salupere, Engelbrecht, Peterson, Maugin, 1998]
- A. Salupere, J. Engelbrecht, P. Peterson, and G. A. Maugin.
Solitonide formeerumine ja interakteerumine. (Formation and
interaction of solitons.)
TTÜ teadus- ja arendustegevuse näitus, TTÜ 80. aastapäev,
(The 80th anniversary of Tallinn Technical University (TTU), Exposition of
scientific and development activities in TTU),
1998.
- [Salupere, Engelbrecht, Maugin, Peterson, 1995]
- A. Salupere, J. Engelbrecht, G. A .Maugin, and P. Peterson.
Formation and interaction of solitons. 3rd Annual Exhibition of the
Soros Centre for Contemporary Arts, November 22--December 17, 1995.